Publications List (Significant Paper)
FY 2026
- Medullary cavity expansion is mediated by distinct cell populations during fetal bone development. Nature Commun. [Division of Mucosal Immunology] (2026-04-14)
FY 2025
- A hierarchical Rorc(γt) cis-regulatory cascade orchestrates differentiation of RORγt⁺ innate immune cells. Immunity [Division of Mucosal Immunology] (2026-03-24)
- Geometry-preserving vector field reconstruction of high-dimensional cell-state dynamics using ddHodge. Nature Commun. [Division of Transcriptomics] (2025-12-29) Press Release
- Reconstructing epigenomic dynamics through a single-cell multi-epigenome data integration framework. Nature Commun. [Division of Transcriptomics] (2025-12-17)
- Integrative and accurate annotations enhance current nonsense-mediated mRNA decay rules. Nucleic Acids Res. [Division of Bioinformatics] (2025-12-02)
- JoGo 1.0: the ACTG hierarchical nomenclature and database covering 4.7 million haplotypes across 19,194 human genes. Nucleic Acids Res. [Division of Biomedical Information Analysis] [Division of Transcriptomics] (2025-11-29)
- Microglia–neuron crosstalk through Hex–GM2–MGL2 maintains brain homeostasis. Nature [Division of Molecular Neuroimmunology] (2025-08-06)
- Critical roles of chronic BCR signaling in the differentiation of anergic B cells into age-associated B cells in aging and autoimmunity. Science Advances [Division of Immunology and Genome Biology] (2025-04-18)
FY 2024
- Maternal asthma imprints fetal lung ILC2s via glucocorticoid signaling leading to worsened allergic airway inflammation in murine adult offspring. Nature Commun. [Division of Allergy and Immunology] (2025-01-13)
- Identification of α-galactosylceramide as an endogenous mammalian antigen for iNKT cells. J. Exp. Med. [Division of Metabolomics] (2024-12-20)
- Transcription-coupled changes in genomic region proximities during transcriptional bursting. Science Advances [Division of Gene Expression Dynamics] (2024-12-06)
- Plasma cell differentiation is regulated by the expression of histone variant H3.3. Nature Commun. [Division of Immunology and Genome Biology] [Division of Transcriptomics] (2024-06-20)
- Hepatocytes differentiate into intestinal epithelial cells through a hybrid epithelial/mesenchymal cell state in culture. Nature Commun. [Division of Organogenesis and Regeneration] (2024-05-16)
- Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states. Nature Commun. [Division of Transcriptomics] (2024-05-08)
- A genome-wide association study identified PTPN2 as a population-specific susceptibility gene locus for primary biliary cholangitis. Hepatology [Division of Biomedical Information Analysis] (2024-04-23)
- Combined and differential roles of ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells. Nature Commun. [Sasaki Laboratory (Epigenomics and Development)] (2024-04-16)