九州大学教育研究プログラム・研究拠点形成プロジェクト (P&P) Aタイプ「ゲノム・エピゲノム研究拠点形成」

原著論文　 Original Reserch Papers

Okae, H., Matoba, S. Nagashima, T., Mizutani, E., Inoue, K., Ogonuki, N., Chiba, H., Funayama, R., Tanaka, S., Yaegashi, N., Nakayama, K., Sasaki, H., Ogura, A. & Arima, T.: RNA sequencing-based identification of aberrant imprinting in cloned mice.; Hum. Mol. Genet. 23, 992-1001 (2014); PubMed

Suyama, M.: Mechanistic insights into mutually exclusive splicing in dynamin 1.; Bioinformatics 29, 2084-2087 (2013); PubMed

Katahira, J., Okuzaki, D., Inoue, H., Yoneda, Y., Maehara, K. & Ohkawa, Y.: Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I.; Nucleic Acids Res. 41, 7060-7072 (2013); PubMed

Kumamaru, H., Saiwai, H., Kubota, K., Kobayakawa, K., Yokota, K., Ohkawa, Y., Shiba, K., Iwamoto, Y. & Okada, S.: Therapeutic activities of engrafted neural stem/precursor cells are not dormant in the chronically injured spinal cord.; Stem Cells 31, 1535-1547 (2013); PubMed

Nakamura, Y., Mori, K., Saitoh, K., Oshima, K., Mekuchi, M., Sugaya, T., Shigenobu, Y., Ojima, N., Muta, S., Fujiwara, A., Yasuike, M., Oohara, I., Hirakawa, H., Chowdhury, VS., Kobayashi, T., Nakajima, K., Sano, M., Wada, T., Tashiro, K., Ikeo, K., Hattori, M., Kuhara, S., Gojobori, T. & Inouye, K.: Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.; Proc. Natl. Acad. Sci. USA. 110, 11061-11066 (2013); PubMed

Nitta, H., Unoki, M., Ichiyanagi, K., Kosho, T., Shigemura, T., Takahashi, H., Velasco, G., Francastel, C., Picard, C., Kubota, T. & Sasaki, H.: Three novel ZBTB24 mutations identified in Japanese and Cape Verdean type 2 ICF syndrome patients.; J. Hum. Genet. 58, 455-460 (2013); PubMed

Fukuda, K., Ichiyanagi, K., Yamada, Y., Go, Y., Udono, T., Wada, S., Maeda, T., Soejima, H., Saitou, N., Ito, T. & Sasaki, H.: Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes.; J. Hum. Genet. 58, 446-454 (2013); PubMed

Jairin, J., Kobayashi, T., Yamagata, Y., Sanada-Morimura, S., Mori, K., Tashiro, K., Kuhara, S., Kuwazaki, S., Urio, M., Suetsugu, Y., Yamamoto, K., Matsumura, M. & Yasui, H.: A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens.; DNA Res. 20, 17-30 (2013); PubMed

Shirane, K., Toh, H., Kobayashi, H., Miura, F., Chiba, H., Ito, T., Kono, T. & Sasaki, H.: Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases.; PLoS Genet. 9, e1003439 (2013); PubMed

Porciuncula, Jde O., Furukawa, T., Mori, K., Shida, Y., Hirakawa, H., Tashiro, K., Kuhara, S., Nakagawa, S., Morikawa, Y. & Ogasawara, W.: Single nucleotide polymorphism analysis of a trichoderma reesei hyper-cellulolytic mutant developed in Japan.; Biosci. Biotechnol. Biochem. 77, 534-543. (2013); PubMed

Yamamoto, Y., Watanabe, T., Hoki, Y., Shirane, K., Li, Y., Ichiyanagi, K., Kuramochi-Miyagawa, S., Toyoda, A., Fujiyama, A., Oginuma, M., Suzuki, H., Sado, T., Nakano, T. & Sasaki, H.: Targeted gene silencing in mouse germ cells by insertion of a homologous DNA into a piRNA generating locus.; Genome Res. 23, 292-299 (2013); PubMed

Doi, K., Mori, K., Tashiro, K., Fujino, Y., Nagayoshi, Y., Hayashi, Y., Kuhara, S. & Ohshima, T.: Draft genome sequence of pediococcus lolii NGRI 0510Q(T) isolated from ryegrass silage.; Genome Announc. 1, e00156-12 (2013); PubMed

Maehara, K., Odawara, J., Harada, A., Yoshimi, T., Nagao, K., Obuse, C., Akashi, K., Tachibana, T., Sakata, T. & Ohkawa, Y.: A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples.; Nucleic Acids Res. 41, 54-62. (2013); PubMed

Takahashi, T., Matsuzaki, H., Tomizawa, S., Okamura, E., Ichiyanagi, T., Fukamizu, A., Sasaki, H. & Tanimoto, K.: Sequences in the H19 ICR that are transcribed as small RNA in oocytes are dispensable for methylation imprinting in YAC transgenic mice.; Gene 508, 26-34 (2012); PubMed

Villacorte, MD., Suzuki, K., Hirasawa, A., Ohkawa, Y., Suyama, M., Maruyama, T., Aoki, D., Ogino, Y., Miyagawa, S., Terabayashi, T., Tomooka, Y., Nakagata, N. & Yamada, G.: β-catenin signaling regulates Foxa2 expression during endometrial hyperplasia formation; Oncogene Sep 3.(2012); PubMed

Harada, A., Okada, S., Konno, D., Odawara, J., Yoshimi, T., Yoshimura, S., Kumamaru, H., Saiwai, H., Tsubota, T., Kurumizaka, H., Akashi, K., Tachibana, T., Imbalzano, A.N. & Ohkawa, Y.: Chd2 interacts with H3.3 to determine myogenic cell fate; EMBO J. 31, 2994-3007 (2012); PubMed

Kumamaru, H., Ohkawa, Y., Saiwai, H., Yamada, H., Kubota, K., Kobayakawa, K., Akashi, K., Okano, H., Iwamoto, Y. & Okada, S.: Direct isolation and RNA-seq reveal environment-dependent properties of engrafted neural stem/progenitor cells; Nat. Commun. 3, 1140 (2012); PubMed

Matsuzawa, T., Mori, K., Kadowaki, T., Shimada, M., Tashiro, K., Kuhara, S., Inagawa, H., Soma, G. & Takegawa, K.: Genome sequence of Pantoea agglomerans strain IG1; J. Bacteriol. 194,1258-1259 (2012); PubMed

Futagami, T., Mori, K., Yamashita, A., Wada, S., Kajiwara, Y., Takashita, H., Omori, T., Takegawa, K., Tashiro, K., Kuhara, S. & Goto, M.: Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu; Eukaryot. Cell 10, 1586-1587 (2011); PubMed

Odawara, J., Harada, A., Yoshimi, T., Maehara, K., Tachibana, T., Okada, S., Akashi, K. & Ohkawa, Y.: The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach; BMC Genomics 12, 516 (2011); PubMed

Watanabe, T., Tomizawa, S., Mitsuya, K., Totoki, Y., Yamamoto, Y., Kuramochi-Miyagawa, S., Iida, N., Hoki, Y., Murphy, P.J., Toyoda, A., Gotoh, K., Hiura, H., Arima, T., Fujiyama, A., Sado, T., Shibata, T., Nakano, T., Lin, H., Ichiyanagi, K., Soloway, P.D. & Sasaki, H.: Role for piRNAs and non-coding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.; Science 332, 848-852 (2011); Pubmed