九州大学生体防御医学研究所分子機能制御学部門エピゲノム制御学分野

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生体防御医学研究所

業績リスト

名古屋大学　教授：一柳健司

原著論文　 Original Research Papers

Ohishi, H.*, Au Yeung, W.K.*, Unoki, M., Ichiyanagi, K., Fukuda, K., Maenohara, S., Shirane, K., Chiba, H., Sado, T. & Sasaki, H. (*These authors equally contributed to the work.): Characterization of genetic-origin-dependent monoallelic expression in mouse embryonic stem cells.; Genes Cells 25, 54-64 (2020); PubMed

Hiramoto, T., Tahara, M., Liao, J., Soda, Y., Miura, Y., Kurita, R., Hamana, H., Inoue K., Kohara, H., Hijikata, Y., Okano, S., Yamaguchi, Y., Oda, Y., Ichiyanagi, K., Toh, H., Sasaki, H., Kishi, H., Ryo, A., Muraguchi, A., Takeda, M. & Tani, K.: Non-transmissible MV vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells.; Mol. Ther. 28, 129-141 (2020); PubMed

Inoguchi, Y., Ichiyanagi, K., Ohishi, H., Maeda, Y., Sonoda, N., Ogawa, Y., Inoguchi, T. & Sasaki, H.: Poorly controlled diabetes during pregnancy and lactation activates the Foxo1 pathway and causes glucose intolerance in adult offspring.; Sci. Rep. 9, 10181 (2019); PubMed

Matsuda, S., Yasukawa, T., Sakaguchi, Y., Ichiyanagi, K., Unoki, M., Gotoh, K., Fukuda, K., Sasaki, H., Suzuki, T. & Kang, D.: Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA.; Sci. Rep. 8, 5801 (2018); PubMed

Shimosuga, K., Fukuda, K., Sasaki, H. & Ichiyanagi, K.: Locus-specific hypomethylation of the mouse IAP retrotransposon is associated with transcription factor-binding sites.; Mobile DNA 8, 20 (2017); PubMed

Inoue, K., Ichiyanagi, K., Fukuda, K., Glinka, M. & Sasaki, H.: Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice.; PLoS Genet. 13, e1006926 (2017); PubMed

Fukuda, K., Inoguchi, Y., Ichiyanagi, K., Ichiyanagi, T., Go, Y., Nagano, M., Yanagawa, Y., Takaesu, N., Ohkawa, Y., Imai, H. & Sasaki, H.: Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability.; Hum. Mol. Genet. 26, 3508-3519 (2017); PubMed

Kobayashi, M., Kato, H., Hada, H., Itoh-Nakadai, A., Fujiwara, T., Muto, A., Inoguchi, Y., Ichiyanagi, K., Houjou, W., Tomosugi, N., Sasaki, H., Harigae, H. & Igarashi, K.: Iron-heme-Bach1 axis is involved in erythroblast adaptation to iron deficiency.; Haematologica 102, 454-465 (2017); PubMed

Toh, H., Shirane, K., Miura, F., Kubo, N., Ichiyanagi, K., Hayashi, K., Saitou, M., Suyama, M., Ito, T. & Sasaki, H.: Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.; BMC Genomics (in press)

Hayashi, M., Maehara, K., Harada, A., Semba, Y., Kudo, K., Takahashi, H., Oki, S., Meno, C., Ichiyanagi, K., Akashi, K. & Ohkawa, Y.: Chd5 regulates MuERV-L/MERVL expression in mouse embryonic stem cells via H3K27me3 modification and histone H3.1/H3.2.; J. Cell. Biochem. 117, 780-792 (2016); PubMed

Ichiyanagi, T., Ichiyanagi, K., Ogawa, A., Kuramochi-Miyagawa, S., Nakano, T., Chuma, S., Sasaki, H. & Udono, H.: HSP90α plays an important role in piRNA biogenesis and retrotransposon repression in mouse.; Nucl. Acids Res. 42, 11903-11911 (2014); PubMed

Umemori, J., Mori, A., Ichiyanagi, K., Uno, T. & Koide, T.: Identification of both copy number variation-type and constant-type core elements in a large segmental duplication region of the mouse genome.; BMC Genomics 14, 455 (2013); PubMed

Nitta, H., Unoki, M., Ichiyanagi, K., Kosho, T., Shigemura, T., Takahashi, H., Velasco, G., Francastel, C., Picard, C., Kubota, T. & Sasaki, H.: Three novel ZBTB24 mutations identified in Japanese and Cape Verdean type 2 ICF syndrome patients.; J. Hum. Genet. 58, 455-460 (2013); PubMed

Fukuda, K., Ichiyanagi, K., Yamada, Y., Go, Y., Udono, T., Wada, S., Maeda, T., Soejima, H., Saitou, N., Ito, T. & Sasaki, H.: Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes.; J. Hum. Genet. 58, 446-454 (2013); PubMed

Yamamoto, Y., Watanabe, T., Hoki, Y., Shirane, K., Li, Y., Ichiyanagi, K., Kuramochi-Miyagawa, S., Toyoda, A., Fujiyama, A., Oginuma, M., Suzuki, H., Sado, T., Nakano, T. & Sasaki, H.: Targeted gene silencing in mouse germ cells by insertion of a homologous DNA into a piRNA generating locus.; Genome Res. 23, 292-299 (2013); PubMed

Ichiyanagi, T., Ichiyanagi, K., Miyake, M. & Sasaki, H.: Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development.; Nucl. Acids Res. 41, 738-745 (2013); PubMed

Ichiyanagi, K.: Inhibition of MspI cleavage activity by hydroxymethylation of the CpG site: A concern for DNA modification studies using restriction endonucleases.; Epigenetics 7, 131-136 (2012); PubMed

Ichiyanagi, K., Li, Y., Watanabe, T., Ichiyanagi, T., Fukuda, K., Kitayama, J., Yamamoto, Y., Kuramochi-Miyagawa, S., Nakano, T., Yabuta, Y., Seki, Y., Saitou, M., & Sasaki, H.: Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development.; Genome Res. 21, 2058-2066 (2011); PubMed

Watanabe, T., Tomizawa, S., Mitsuya, K., Totoki, Y., Yamamoto, Y., Kuramochi-Miyagawa, S., Iida, N., Hoki, Y., Murphy, P.J., Toyoda, A., Gotoh, K., Hiura, H., Arima, T., Fujiyama, A., Sado, T., Shibata, T., Nakano, T., Lin, H., Ichiyanagi, K., Soloway, P.D. & Sasaki, H.: Role for piRNAs and non-coding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.; Science 332, 848-852 (2011); PubMed

Suzuki J, Yamaguchi K, Kajikawa M, Ichiyanagi K, Adachi N, Koyama H, Takeda S, & Okada N.: Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition.; PLoS Genet. 5:e1000461 (2009); PubMed

Ichiyanagi, K. & Okada, N.: Mobility pathways for vertebrate L1, L2, CR1, and RTE clade retrotransposons.; Mol. Biol. Evol. 25,1148-1157 (2008); PubMed

Ichiyanagi, K., Nishihara, H., Duvernell, D.D. & Okada, N.: Acquisition of endonuclease specificity during evolution of L1 retrotransposon.; Mol. Biol. Evol. 24, 2009-2015 (2007); PubMed

Ichiyanagi, K., Nakajima, R., Kajikawa, M., & Okada, N.: Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts.; Genome Res 17, 33-41 (2007); PubMed

Honda, H., Ichiyanagi, K., Suzuki, J., Ono, T., Koyama, H., Kajikawa, M., & Okada, N.: A new system for analyzing LINE retrotransposition in the chicken DT40 cell line widely used for reverse genetics.; Gene 395, 116-124 (2007); PubMed

Ichiyanagi, K., & Okada, N.: Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method.; Gene 383, 108-116 (2006); PubMed

Kajikawa, M., Ichiyanagi, K., Tanaka, N., & Okada, N.: Isolation and characterization of active LINE and SINEs from the eel.; Mol. Biol. Evol. 22, 673-682 (2005); PubMed

Conlan, L. H., Stanger, M. J., Ichiyanagi, K., & Belfort, M.: Localization, mobility and fidelity of retrotransposed Group II introns in rRNA genes.; Nucl. Acids Res. 33, 5262-5270 (2005); PubMed

Ichiyanagi, K., Beauregard, A., & Belfort, M.: A bacterial group II intron favors retrotransposition into plasmid targets.; Proc. Natl. Acad. Sci. USA 100, 15742-15747 (2003); PubMed

Ichiyanagi, K., Beauregard, A., Lawrence, S., Smith, D., Cousineau, B., & Belfort, M.: Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets.; Mol. Microbiol. 46, 1259-1272 (2002); PubMed

Ichiyanagi, K., Ishino, Y., Ariyoshi, M., Komori, K., & Morikawa, K.: Crystal structure of an archaeal intein-encoded homing endonuclease PI-PfuI.; J. Mol. Biol. 300, 889-901 (2000); PubMed

Komori, K., Fujita, N., Ichiyanagi, K., Shinagawa, H., Morikawa, K., & Ishino, Y.: PI-PfuI and PI-PfuII, intein-coded homing endonucleases from Pyrococcus furiosus. I. Purification and identification of the homing-type endonuclease activities.; Nucl. Acids Res. 27, 4167-4174 (1999); PubMed

Komori, K., Ichiyanagi, K., Morikawa, K., & Ishino, Y.: PI-PfuI and PI-PfuII, intein-coded homing endonucleases from Pyrococcus furiosus. II. Characterization Of the binding and cleavage abilities by site-directed mutagenesis.; Nucl. Acids Res. 27, 4175-4182 (1999); PubMed

Ichiyanagi, K., Iwasaki, H., Hishida, T., & Shinagawa, H.: Mutational analysis on structure-function relationship of a holliday junction specific endonuclease RuvC.; Genes Cells 3, 575-586 (1998); PubMed

総説　Reviews　/　英文　English

Ichiyanagi, K.: Regulating Pol III transcription to change Pol II transcriptome.; Cell Cycle 13, 3625-3626 (2014); PubMed

Ichiyanagi, K.: Epigenetic regulation of transcription and possible functions of mammalian short interspersed elements, SINEs.; Genes Genet. Syst. 88, 19-29 (2013); PubMed

Ichiyanagi, K.: Transposable elements in eukaryotic genomes: epigenetic regulation by the host and functionalization for the host.; Genes Genet. Syst. 88, 1 (2013); PubMed

総説　Reviews　/　和文　Japanese

井上晃太, 一柳健司, 佐々木裕之: エピジェネティクス研究の歴史と今; 生体の科学 65, 529-534 (2014)

一柳健司，佐々木裕之: ゲノムワイドなDNAメチル化解析; 分子細胞治療 8, 372 - 376 (2009)

一柳健司: カモノハシ・ゲノムから見た哺乳類の進化; 科学 78, 8817-8819 (2008)

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九州大学生体防御医学研究所分子機能制御学部門エピゲノム制御学分野
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